I want to create proton vpn Qube

How many memory have you got in your laptop? perhaps you don’t have enough in your laptop…

The Tor network will still be slower than with a “classic” connection and if you use a VPN, it will be even slower.

I don’t understand why you change the set up sys-vpn. If it works with other AppVMs, then no need to tweak it.
I don’t use tor with vpn but you can take a look in this tread:

In your case, you’re using wireguard and NOT openvpn…