I have seen behavior like this:
From a fresh install, then full update. For the first time I open App VM - Disposable (which in my case is from Fedora) I go to a site. I close Disposable. I find the Template has information from Disposable. I never mistakenly opened the Template. So I shut down computer. Power back up. Debris is still in Template Disposable DVM.
I think it may be part of some thing to do with Firefox Sync process.
As far as Brave. Over a year ago I was using Brave on Mint Linux, and after I used the Brave Browser, within 24 hours it would do a long update from the Brave Mothership. After some time, I hypothesized that Brave Browser was reporting back to the Brave Mothership what I was doing on internet.
There are several suggestions of excellent alternate Browsers. I use Mullvad Browser. but to prevent this Synching of information.
I clone a Template of a standard Qube, like Work Qube. I named it Work-Mullvad.
From that I created a Standalone App,
From that I created a brother App, named MV. From that I created several brother App Qubes which are MV, and the OS will provide a number. I use these apps in sequence. One web visit per app. If I have information I want to keep I save the infor in the app. Close the internet connection of the MV-clone. Copy the information to a Qube (which I keep offline. )
Delete the MV-clone I just used.
When I want to get back online. I use the next MV-clone in sequence. Might have to start internet connection again.
As you can see, I don’t do a lot online, or this would be too time consuming and obnoxious.
I have never experimented with it. but one could create a DVM fo Mullvad. But how to avoid the back flow of information into Template, I dunno if it would?
I have also not experimented with using Debian Qubes (???)
Also notice Frefox has a lot of trackers preinstalled. Which getting rid of would, I guess change the Fingerprint.
I seem to recall some more knowledgeable than myself. Saying, Qubes was about Security Anonymity using Qubes (to which I translate, means to achieve Anonymity, one must make effort. Choice of software, programs, Operational Security, Opsec. I also know nothing about how Whonix works - considering issue of back flow in information into Template.)
I wait to hear about your experience and work around for problem.
Best Wishes