Assuming you’re ok to restart the “sys qubes” that bother you:
- open a dom0 terminal
- check which qubes still use fedora-42-xfce:
qvm-ls --fields name,template | grep fedora-42-xfce - run
qvm-shutdown --force --all - run
qvm-prefs default-dvm template fedora-43-xfce - repeat #4 for any other qubes still using fedora-42-xfce
- start your sys-qubes using
qvm-start sys-usbetc. (or just restart the computer)